PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000204699
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 406aa    MW: 44917 Da    PI: 7.1781
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000204699genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
    MDP0000204699 14 KGPWTPEEDQKLLTYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding48.12.6e-1567131148
                      TSSS-HHHHHHHHHHHHHTTTT..................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..................tWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++                  +W++Ia +++ +Rt++++k++w+++l
    MDP0000204699  67 RGKFSLQEEQTIIQLHALLGNRldviihsnstvvlnhvfrRWSAIATHLP-KRTDNEIKNYWNTHL 131
                      89************************************************.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-25564IPR009057Homeodomain-like
PROSITE profilePS5129423.883965IPR017930Myb domain
SuperFamilySSF466899.94E-2511127IPR009057Homeodomain-like
SMARTSM007173.6E-141363IPR001005SANT/Myb domain
PfamPF002491.5E-161461IPR001005SANT/Myb domain
CDDcd001678.44E-121661No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2365135IPR009057Homeodomain-like
PROSITE profilePS5129413.20366135IPR017930Myb domain
SMARTSM007172.8E-1266133IPR001005SANT/Myb domain
PfamPF002496.0E-1467131IPR001005SANT/Myb domain
CDDcd001672.70E-969131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGRSPCCEKV GLKKGPWTPE EDQKLLTYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRLD VIIHSNSTVV LNHVFRRWSA IATHLPKRTD  120
NEIKNYWNTH LKKRLTKMGI DPMTHKPKHH EGLGSGSGLA RDTANISHMA QWESARLEAE  180
ARLGKESKLG FTNANPLQHH LMISSSPNPA HHVVHVSKAP PALPXLDVLK AWQGAWSLTT  240
KSTIRDNVNS MVFSGGSMTA VDDLESPTST LNFPXVNNAF NPPPMQNINN IVPCESGLLQ  300
DNDNVTYGYT DASAAWFAHN YRSGSIDEEE NVIVXTGLSS MIMEDFXDVL VYNSEDHQQN  360
ASLGGHISXN GVGGNGCGGD GFEENRSYWN SLLDLVXTSP SGSPVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-23121355108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008350919.10.0PREDICTED: transcription factor MYB28-like
TrEMBLW9S8D01e-139W9S8D0_9R
STRINGPOPTR_0010s17300.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-103myb domain protein 16